SELECT 
  cscart_product_prices.product_id, 
  MIN(
    IF(
      cscart_product_prices.percentage_discount = 0, 
      cscart_product_prices.price, 
      cscart_product_prices.price - (
        cscart_product_prices.price * cscart_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_product_prices 
WHERE 
  cscart_product_prices.product_id IN (
    165, 166, 86, 106, 105, 247, 101, 33, 32, 
    163, 244, 212, 155, 102, 55, 176, 69, 
    138, 110, 36, 206, 28, 184, 183, 133, 
    132, 125, 120, 223, 225, 224, 146, 147, 
    93, 117, 219, 222, 220, 221, 87, 113, 
    139, 118, 83, 157, 123, 174, 171
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00087

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "151.65"
    },
    "grouping_operation": {
      "using_temporary_table": true,
      "using_filesort": true,
      "cost_info": {
        "sort_cost": "96.00"
      },
      "table": {
        "table_name": "cscart_product_prices",
        "access_type": "ALL",
        "possible_keys": [
          "usergroup",
          "product_id",
          "lower_limit",
          "usergroup_id"
        ],
        "rows_examined_per_scan": 262,
        "rows_produced_per_join": 96,
        "filtered": "36.64",
        "cost_info": {
          "read_cost": "36.45",
          "eval_cost": "19.20",
          "prefix_cost": "55.65",
          "data_read_per_join": "2K"
        },
        "used_columns": [
          "product_id",
          "price",
          "percentage_discount",
          "lower_limit",
          "usergroup_id"
        ],
        "attached_condition": "((`danishecarter_25_march`.`cscart_product_prices`.`lower_limit` = 1) and (`danishecarter_25_march`.`cscart_product_prices`.`product_id` in (165,166,86,106,105,247,101,33,32,163,244,212,155,102,55,176,69,138,110,36,206,28,184,183,133,132,125,120,223,225,224,146,147,93,117,219,222,220,221,87,113,139,118,83,157,123,174,171)) and (`danishecarter_25_march`.`cscart_product_prices`.`usergroup_id` in (0,1)))"
      }
    }
  }
}

Result

product_id price
28 100.00000000
32 299.99000000
33 169.99000000
36 51.00000000
55 359.00000000
69 529.99000000
83 19.99000000
86 359.00000000
87 19.99000000
93 19.99000000
101 188.88000000
102 295.00000000
105 169.99000000
106 179.99000000
110 15.99000000
113 449.99000000
117 729.99000000
118 30.99000000
120 199.99000000
123 17.99000000
125 149.99000000
132 269.99000000
133 229.99000000
138 0.00000000
139 0.00000000
146 44.99000000
147 44.99000000
155 79.99000000
157 499.00000000
163 899.99000000
165 599.95000000
166 749.95000000
171 499.00000000
174 100.75000000
176 648.95000000
183 249.99000000
184 299.99000000
206 179.99000000
212 129.95000000
219 529.99000000
220 1099.99000000
221 2049.00000000
222 529.99000000
223 499.99000000
224 479.99000000
225 199.99000000
244 729.99000000
247 329.49000000